![]() ![]() ![]() -Xmx500g: use a maximum heap size of 500 Gb.start fiji with 500 Gb of RAM preallocated to it) -Xms500g : use an initial heap size of 500 Gb (i.e.ImageJ-linu圆4 -dry-run | sed 's/-Xincgc/-XX:+UseG1GC -verbose:gc -XX:+PrintGCDateStamps'/ > launcher.sh The following configuration has been tested in a machine with 256 CPU cores and 1 TB of RAM, running Ubuntu 22.04, with the latest 1.8.0 JVM: Running fiji for heavy-duty, memory-intensive, high-performance TrakEM2 tasks TrakEM2 tutorials with video tutorials.xml file onto the toolbar, or via “File - Open”. Open an existing project by dragging its.Create new projects from “File - New - TrakEM2 (blank)”.TrakEM2 interacts with the 3D Viewer for visualization of image volumes and 3D meshes. Semantic segmentation: order segmentations in tree hierarchies, whose template is exportable for reuse in other, comparable projects.Image Annotation: floating text labels.3D Visualization: interacting with the 3D Viewer plugin, TrakEM2 displays image volumes and 3D meshes of all kinds.Image Registration: register floating image tiles to each other using SIFT and global optimization algorithms.Measurements: volumes, surfaces, lengths, and also measurements via ImageJ ROIs.Skeletonize entire neuronal arborizations and represent synapses with relational connector objects. Segmentation: manually draw areas across stacks, and sketch structures with balls and pipes.TrakEM2 is an ImageJ plugin for morphological data mining, three-dimensional modeling and image stitching, registration, editing and annotation. If you’d like to help, check out the how to help guide! The content of this page has not been vetted since shifting away from MediaWiki. ![]()
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